* CIMRS authors

FY 2013           

Bi*, H, W.T. Peterson, J.O. Peterson*, and J.L. Fisher* (2012) A comparative analysis of coastal and shelf-slope copepod communities in the northern California Current system: Synchronized response to large scale forcing? Limnol. Oceanogr. 57(5): 1467-1478. doi:10.4319/lo.2012.57.5.1467 

Burke, B.J., Peterson, W.T., Beckman, B.R., Morgan*, C., Daly*, E.A., Litz*, M. (2013) Multivariate models of adult Pacific salmon returns. PLoS ONE 8(1): e54134 doi:10.1371/journal.pone.0054134

Claxton*, A., Jacobson, K. C., Bhuthimethee, M., Teel, D., & Bottom, D. 2013. Parasites in subyearling Chinook salmon (Oncorhynchus tshawytscha) suggest increased habitat use in wetlands compared to sandy beach habitats in the Columbia River estuary. Hydrobiologia, 1-13. DOI 10.1007/s10750-013-1564-z 

Daly*, E.A., Auth*, T.D., Brodeur, R.D., and Peterson, W.T. 2013. Winter Ichthyoplankton biomass as a predictor of early summer prey fields and survival of juvenile salmon in the northern California Current. Marine Ecology Progress Series, 484: 203-217. doi: 10.3354/meps10320  

Francis, T.B., M.D. Scheuerell, R.D. Brodeur, P.S. Levin, J.J. Ruzicka*, N. Tolimieri and W.T. Peterson.  2012. Climate shifts the interaction web of a marine plankton communityGlobal Change Biology, 18(8): 2498-2508.doi: 10.1111/j.1365-2486.2012.02702.x.

Johansson*, M.L., A.L. Sremba*, L.R.Feinberg*, M.A. Banks* and W. T. Peterson. 2012.  The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschi sequenced using 454 next-generation sequencing with a phylogenetic analysis of their position in the Malacostracan family treeMolecular Biology Reports, 39(9): 9009-9021. DOI 10.1007/s11033-012-1772-z

Miller J.A., D.J. Teel, A. Baptista, C.A. Morgan*. 2013. Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon (Oncorhynchus tshawytscha). Can J Fish Aquat Sci 70(4):617-629 

Laurel, B.J., L.A. Copeman*, and C.C. Parrish. 2012.  Role of temperature on lipid/fatty acid composition in Pacific cod (Gadus macrocephalus) eggs and unfed larvae.  Marine Biology, 159(9): 2025-2034. DOI: 10.1007/s00227-012-1989-3

Litz*, M. N. C., Emmett, R. L., Bentley, P. J., Claiborne, A. M., & Barcelo, C. (2013). Biotic and abiotic factors influencing forage fish and pelagic nekton community in the Columbia River plume (USA) throughout the upwelling season 1999–2009. ICES Journal of Marine Science. doi:10.1093/icesjms/fst082

Roegner, G.C., E.A. Daly*, and R.D. Brodeur. 2013. Surface distribution of brachyuran megalopae and ichthyoplankton in the Columbia River plume during transition from downwelling to upwelling conditions. Continental Shelf Research 60:70-86.

Ruzicka*, J.J., Brodeur, R. D., Emmett, R. L., J.H. Steele, J.E. Zamon, C.A. Morgan*,  A.C. Thomas, and T.C. Wainwright. 2012. Interannual variability in the Northern California Current food web structure: changes in energy flow pathways and the role of forage fish, euphausiids, and jellyfish. Progress in Oceanography, 102: 19-41.  http://dx.doi.org/10.1016/j.pocean.2012.02.002

Stoner, A., L.A. Copeman*, M.L. Ottmar. 2013. Molting, growth, and energetics of newly-settled blue king crab: Effects of temperature and comparisons with red king crab. Journal of Experimental Marine Biology and Ecology, 442: 10-21. http://dx.doi.org/10.1016/j.jembe.2013.02.002.  

Suchman C.L., R.D. Brodeur, E.A. Daly* and R.L. Emmett. (2012) Distribution and abundance of large medusae in surface waters off the coasts of Washington and Oregon, USA: seasonal and interannual variability in relation to environmental conditions. Hydrobiologia 690:113-125. DOI 10.1007/s10750-012-1055-7

Takahashi, M. D.M. Checkley Jr., M.N.C. Litz*, R.D. Brodeur, and W.T. Peterson. (2012) Responses in growth rate of larval northern anchovy to anomalous upwelling in the northern California Current. Fish. Oceanogr. 21(6): 393-404. DOI: 10.1111/j.1365-2419.2012.00633.x  

Weitkamp L.A., E.A. Daly*, and J.P. Fisher*. (2012) Early marine residence of juvenile pink and chum salmon in the Northern California current: life at the southern end of the range. NPAFC Tech Rep, 8: 54-57

Yu, H., Bi, H., Burke, B., Lamb*, J., Peterson, W. (2012) Spatial variations in the distribution of yearling spring Chinook salmon off Washington and Oregon using COZIGAM analysisMar Ecol Prog Ser 465: 253-265. doi: 10.3354/meps09909 



FY 2012

Auth*, T.D.  2011. Analysis of the spring-fall epipelagic ichthyoplankton community in the northern California Current in 2004-2009 and its relation to environmental factorsCalCOFI Reports 52:148-167. 

Auth*, T. D., R.D. Brodeur, H.L. Soulen*, L. Ciannelli, W.T. Peterson. 2011.  The response of fish larvae to decadal changes in environmental forcing factors off the Oregon coast.  Fisheries Oceanogr. 20(4): 314-328. DOI: 10.1111/j.1365-2419.2011.00586.x

Baldwin* R.E., M.A. Banks*, and K.C. Jacobson2012. Integrating fish and parasite data as a holistic solution for identifying the elusive stock structure of Pacific sardines (Sardinops sagaxReviews in Fish Biology and Fisheries 22(1):137-156.

Baldwin*, R. E., M. Rew*, M.L.  Johansson*, M. A. Banks*, K.C. Jacobson. 2011. Population structure of three species of Anisakis nematodes recovered from Pacific sardines (Sardinops sagax) distributed throughout the California Current System.  J.  Parasitology 97 (4): 545-554. DOI:10.1645/GE-2690.

Bjorkstedt, E., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, R. Brodeur, J. Peterson*, M. Litz*, J. Gomez-Valdez, G. Gaxiola-Castro, B. Lavaniegos, F. Chavez, C.A. Collins, J. Field, K. Sakuma, P. Warzybok, R. Bradley, J. Jahncke, S. Bograd, F. Schwing, G. S. Campbell, J. Hildebrand, W. Sydeman, S. A. Thompson, J. Largier, C. Halle, S. Y. Kim, J. Abell. State of the California Current 2010-2011: regionally variable response to a strong (but fleeting?) La NiñaCalCOFI Rep. 52:36-68

Black*, B. A., R.J. Allman, I.D. Schroeder, M.J. Schirripa, 2011.  Multidecadal otolith growth histories for red and gray snapper  (Lutjanus spp.).  Fish. Oceanogr.  20 (5): 347-356. DOI: 10.1111/j.1365-2419.2011.00588.x2011.

Brodeur, R.D. , T.D. Auth*, T. Britt*, E.A. Daly*, M.N.C. Litz*, and R.L. Emmett. 2011. Dynamics of larval and juvenile rockfish (Sebastes spp.) recruitment in coastal waters of the Northern California Current. ICES CM 2011/H:12.

Claiborne, A., Fisher*, J.P., Hayes, S.A., Emmett, R. L. 2011. Size at release, size selective mortality, and age of maturity of Willamette River hatchery yearling Chinook salmonTransactions of the American Fisheries Society 140(4):1135-1144. DOI:10.1080/00028487.2011.607050

Copeman*, L.A., A.W. Stoner, M.L. Ottmar, B. Daly, C.C. Parrish, and G.L. Eckert. 2012. Total lipids, lipid classes, and fatty acids of newly settled red king crab (Paralithodes camtschaticus): Comparison of hatchery-cultured and wild crabs. J. Shellfish Research, 31(1):153-165. DOI: 10.2983/035.031.0119

Daly*, E.A., R.D. Brodeur, J.P. Fisher*, L.A. Weitkamp., D.J. Teel, and B.R. Beckman. (2012) Spatial and trophic overlap of marked and unmarked Columbia River Basin spring Chinook salmon during early marine residence with implications for competition between hatchery and naturally produced fishEnv Biol Fishes94(1):117-134. DOI: 10.1007/s10641-011-9857-4

Du*, X., W. Peterson, and A. McCulloch*.  2011.  An unusual bloom of the dinoflagellate Akashiwo sanguine off the central  Oregon, USA, coast in autumn 2009Harmful Algae 10(6).  DOI:10.1016/j.hal.2011.06.011.

Gómez-Gutiérrez, J., M. C. Strüder-Kypke, D. H. Lynn, T. C. Shaw*, M. J. Aguilar-Méndez, A. López-Cortés, S. Martínez-Gómez, C. J. Robinson.  2012. Pseudocollinia brintoni gen. nov., sp. nov. (Apostomatida: Colliniidae), a parasitoid ciliate infecting the euphausiid Nyctiphanes simplex.  Dis. Aquat. Org. 99:57-78.  doi: 10.3354/dao02450.

Harvey, H.R., R.L. Pleuthner, E.J. Lessard, M.J. Bernhardt,and C.T. Shaw*.  2012.  Physical and biochemical properties of the euphausiids Thysanoessa inermis,Thysanoessa raschii, and Thysanoessa longipes in the eastern Bering Sea.  Deep-Sea Res. II 65-70:173-183.  doi:10.1016/j.dsr2.2012.02.007.

Jacobson K.C. and R.E. Baldwin* and D. Reese. 2012. Parasite communities indicate effects of cross-shelf distributions, but not mesoscale oceanographic features on northern California Current mid-trophic food web.  Marine Ecology Progress Series 454:19-36. doi: 10.3354/meps09654

Johansson*, M., E. Duda*, A. Sremba*, M. Banks*, and W. Peterson. 2012. Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencingMolecular Biology Reports, 39(5): 5755-5760. DOI: 10.1007/s11033-011-1385-y.

Keister*, J. E. E. Di Lorenzo, C.A. Morgan*, V. Combes, W.T. Peterson. 2011.  Zooplankton species composition is linked to ocean transport in the Northern California Current.  Global Change Biology 17 (7): 2498-2511. DOI: 10.1111/j.1365-2486.2010.02383.x

Litz*, M., A.J., Phillips*, R.L. Emmett, and R. Brodeur. 2011. Seasonal occurrences of humboldt squid (Dosidicus gigas) in the Northern California current system.Calif. Coop. Oceanic Fish. Invest. Rep. 52: 97-108.  

Pool*, Suzan S., D.C. Reese*, and R.D. Brodeur. 2012. Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northern California Current System. Environ. Biol. of Fishes, 93 (2):233-243. DOI: 10.1007/s10641-011-9909-9 FEB 2012.

Rupp*, D. E., T. C. Wainwright, P. W. Lawson, and W. T. Peterson. 2011. Marine environment-based forecasting of coho salmon (Oncorhynchus kisutch) adult recruitmentFisheries Oceanography 21 (1):1-19. DOI: 10.1111/j.1365-2419.2011.00605.x2012.

Rupp*, D. E., T. C. Wainwright, and P. W. Lawson. 2012. Effect of forecast skill on management of the Oregon Coast coho salmon (Oncorhynchus kisutch) fishery.Canadian Journal of Fisheries and Aquatic Sciences 69:1016-1032. doi:10.1139/F2012-040

Ruzicka*, J. J., T. C. Wainwright, and W. T. Peterson. 2011. A model-based meso-zooplankton production index and its relation to the ocean survival of juvenile coho (Oncorhynchus kisutch). Fisheries Oceanography 20(6): 544-559. DOI: 10.1111/j.1365-2419.2011.00601.x

Steele, J. H. and J.J. Ruzicka*. 2011. Constructing end-to-end models using ECOPATH data. 2011.  J.  Marine Sys. 87 (3-4): 227-238. DOI: 10.1016/j.jmarsys.2011.04.005

Suchman, C.L., Brodeur, R.D., Daly*, E.A. and Emmett, R.L. (2012). Large medusae in surface waters of the Northern California Current: variability in relation to environmental conditions. Hydrobiologia. 690:113–125.